Expression Analysis of Ribosomal Protein Genes, eL13 and eL14 in Nasopharyngeal Carcinoma Cell Lines
DOI:
https://doi.org/10.33736/tur.1962.2020Abstract
Increasing evidence of the association between ribosomal protein (RP) genes with nasopharyngeal carcinoma (NPC) have been derived from findings of their differential expression patterns in NPC cell lines. Nevertheless, expression data from a comprehensive list of RP gene family members is still lacking. This paper reports the assessment of two RP genes, eL13 and eL14, with regards to their expression patterns in several NPC cell lines (TW04, TW01, HK1, HONE1 and SUNE-1) relative to a non-malignant control (NP69). A conventional Reverse Transcriptase-Polymerase Chain Reaction (RT-PCR) assay was employed. Analysis of eL13 has never been explored before this, whereas investigation of eL14 represents an extended study. We found a general over-expression trend of eL14 in 40% (2 of 5; TW01 and HONE-1) of the NPC cell lines studied, with higher upregulated level in only one (TW01) of them. However, this pattern of expression level is not statistically significant. Expression of eL13 was not detected in any of the cell lines used. The inconsistency of these expression patterns demonstrates an elusive nature of RP activities in the malignancy of the nasopharynx.
References
Aarøe, J., Lindahl, T., Dumeaux, V., Sæbø, S., Tobin, D., Hagen, N., Skaane, P., Lönneborg, A., Sharma, P., & Børresen-Dale, A. L. (2010). Gene expression profiling of peripheral blood cells for early detection of breast cancer. Breast Cancer Research, 12(1), R7.
https://doi.org/10.1186/bcr2472
Armstrong, R. W., Kutty, M. K., Dharmalingam, S. K., & Ponnudurai, J. R. (1979). Incidence of nasopharyngeal carcinoma in Malaysia, 1968-1977. British Journal of Cancer, 40(4), 557-567.
https://doi.org/10.1038/bjc.1979.221
Azizah, M., Saleha, I. T, Hashimah, A., Asmah, Z. A., Mastulu, M. (Eds). (2015). Malaysian National Cancer Registry Report 2007-2011. National Cancer Institute, Ministry of Health Malaysia.
Brennan, B. (2006). Nasopharyngeal carcinoma. Orphanet Journal of Rare Diseases, 1(1), 23.
https://doi.org/10.1186/1750-1172-1-23
Chang, E. T., & Adami, H. O. (2006). The enigmatic epidemiology of nasopharyngeal carcinoma. Cancer Epidemiology and Prevention Biomarkers, 15(10), 1765-1777.
https://doi.org/10.1158/1055-9965.EPI-06-0353
Cho, W. C. S. (2007). Nasopharyngeal carcinoma: molecular biomarker discovery and progress. Molecular Cancer, 6(1), 1.
https://doi.org/10.1186/1476-4598-6-1
de Las Heras-Rubio, A., Perucho, L., Paciucci, R., Vilardell, J., & LLeonart, M. E. (2014). Ribosomal proteins as novel players in tumorigenesis. Cancer and Metastasis Reviews, 33(1), 115-141.
https://doi.org/10.1007/s10555-013-9460-6
Devi, B. C., Pisani, P., Tang, T. S., & Parkin, D. M. (2004). High incidence of nasopharyngeal carcinoma in native people of Sarawak, Borneo Island. Cancer Epidemiology and Prevention Biomarkers, 13(3), 482-486.
Dolezal, J. M., Dash, A. P., & Prochownik, E. V. (2018). Diagnostic and prognostic implications of ribosomal protein transcript expression patterns in human cancers. BMC Cancer, 18(1), 275.
https://doi.org/10.1186/s12885-018-4178-z
Fang, W., Li, X., Jiang, Q., Liu, Z., Yang, H., Wang, S., Xie, S., Liu, Q., Liu, T., Huang, J., & Xie, W. (2008). Transcriptional patterns, biomarkers and pathways characterizing nasopharyngeal carcinoma of Southern China. Journal of Translational Medicine, 6(1), 32.
https://doi.org/10.1186/1479-5876-6-32
Glaser, R., Zhang, H. Y., Yao, K. T., Zhu, H. C., Wang, F. X., Li, G. Y., Wen, D.S., & Li, Y. P. (1989). Two epithelial tumor cell lines (HNE-1 and HONE-1) latently infected with Epstein-Barr virus that were derived from nasopharyngeal carcinomas. Proceedings of the National Academy of Sciences, 86(23), 9524-9528.
https://doi.org/10.1073/pnas.86.23.9524
Goudarzi, K. M., & Lindström, M. S. (2016). Role of ribosomal protein mutations in tumor development. International Journal of Oncology, 48(4), 1313-1324.
https://doi.org/10.3892/ijo.2016.3387
Gullo, C. A., Low, W. K., & Teoh, G. (2008). Association of Epstein-Barr virus with nasopharyngeal carcinoma and current status of development of cancer-derived cell lines. Annals Academy of Medicine Singapore, 37(9), 769-77.
He, S., Guo, G. M., Liu, F. X., Huang, X. P., Xu, X., Cai, Y., Han, Y.L., Zhan, Q.M., Wu, M., Dong, J.T., & Wang, G. Q. (2008). Molecular analysis in combination with iodine staining may contribute to the risk prediction of esophageal squamous cell carcinoma. Journal of Cancer Research and Clinical Oncology, 134(3), 307-315.
https://doi.org/10.1007/s00432-007-0269-y
Hildesheim, A., & Levine, P. H. (1993). Etiology of nasopharyngeal carcinoma: a review. Epidemiologic Reviews, 15(2), 466-485.
https://doi.org/10.1093/oxfordjournals.epirev.a036130
Huang, D. P., Ho, J. H. C., Poon, Y. F., Chew, E. C., Saw, D., Lui, M., Li, C. L., Mak, L. S., Lai, S. H., & Lau, W. H. (1980). Establishment of a cell line (NPC/HK1) from a differentiated squamous carcinoma of the nasopharynx. International Journal of Cancer, 26(2), 127-132.
https://doi.org/10.1002/ijc.2910260202
Huang, X. P., Zhao, C. X., Li, Q. J., Cai, Y., Liu, F. X., Hu, H., & Wang, M. R. (2006). Alteration of RPL14 in squamous cell carcinomas and preneoplastic lesions of the esophagus. Gene, 366(1), 161-168.
https://doi.org/10.1016/j.gene.2005.09.025
Kardos, G. R., Dai, M. S., & Robertson, G. P. (2014). Growth inhibitory effects of large subunit ribosomal proteins in melanoma. Pigment Cell & Melanoma Research, 27(5), 801-812.
https://doi.org/10.1111/pcmr.12259
Kobayashi, T., Sasaki, Y., Oshima, Y., Yamamoto, H., Mita, H., Suzuki, H., Toyota, M., Tokino, T., Itoh, F., Imai, K., & Shinomura, Y. (2006). Activation of the ribosomal protein L13 gene in human gastrointestinal cancer. International Journal of Molecular Medicine, 18(1), 161-170.
https://doi.org/10.3892/ijmm.18.1.161
Li, C. C., Yu, M. C., & Henderson, B. E. (1985). Some epidemiologic observations of nasopharyngeal carcinoma in Guangdong, People's Republic of China. National Cancer Institute Monograph, 69, 49-52.
Li, Z., & Zong, Y. S. (2014). Review of the histological classification of nasopharyngeal carcinoma. Journal of NasoPharyngeal Carcinoma, 1(15).
Lin, C. T., Chan, W. Y., Chen, W. A. N. N. H. S. I. N., Huang, H. M., Wu, H. C., Hsu, M. M., Chuang, S.M., & Wang, C. C. (1993). Characterization of seven newly established nasopharyngeal carcinoma cell lines. Laboratory Investigation: A Journal of Technical Methods and Pathology, 68(6), 716-727.
Ma, X. R., Sim, E. U. H., Ling, T. Y., Tiong, T. S., Subramaniam, S. K., & Khoo, A. S. B. (2012). Expression trend of selected ribosomal protein genes in nasopharyngeal carcinoma. The Malaysian Journal of Medical Sciences, 19(4), 23-30.
Peterson, B. R., & Nelson, B. L. (2013). Nonkeratinizing undifferentiated nasopharyngeal carcinoma. Head and Neck Pathology, 7(1), 73-75.
https://doi.org/10.1007/s12105-012-0401-4
Shriver, S. P., Shriver, M. D., Tirpak, D. L., Bloch, L. M., Hunt, J. D., Ferrell, R. E., & Siegfried, J. M. (1998). Trinucleotide repeat length variation in the human ribosomal protein L14 gene (RPL14): localization to 3p21. 3 and loss of heterozygosity in lung and oral cancers. Mutation Research/Mutation Research Genomics, 406(1), 9-23.
https://doi.org/10.1016/S1383-5726(98)00006-5
Sim, E. U. H., Toh, A. K. L., & Tiong, T. S. (2008). Preliminary findings of down-regulated genes in nasopharyngeal carcinoma. Asia Pacific Journal of Molecular Biology and Biotechnology, 16(3), 79-84.
Sim, E. U. H., Tiong, T. S., Selva, K. S., Ong, T. A., & Teh, G. C. (2010a). Relationship of ethnicity, age and gender to incidence of bladder and nasopharyngeal cancers in Kuching, Sarawak. Sarawak Museum Journal, LXVII (88), 25-38.
Sim, E. U. H., Ang, C. H., Ng, C. C., Lee, C. W., & Narayanan, K. (2010b). Differential expression of a subset of ribosomal protein genes in cell lines derived from human nasopharyngeal epithelium. Journal of Human Genetics, 55(2), 118-120.
https://doi.org/10.1038/jhg.2009.124
Sim, E. U. H., Chan, S. L. L., Ng, K. L., Lee, C. W., & Narayanan, K. (2016). Human ribosomal proteins RPeL27, RPeL43, and RPeL41 are upregulated in nasopharyngeal carcinoma cell lines. Disease Markers, 2016. Article ID 5179594.
https://doi.org/10.1155/2016/5179594
Sim, E. U. H., Ng, K. L., Lee, C. W., & Narayanan, K. (2017). The uS8, uS4, eS31, and uL14 ribosomal protein genes are dysregulated in nasopharyngeal carcinoma cell lines. BioMed Research International, 2017. Article ID 4876954.
https://doi.org/10.1155/2017/4876954
Sim, E. U. H., Chee, C. S. M., Vasudevan, L., Ng, K. L., & Chan, S. L. L. (2018). Selective differential expression of the ribosomal protein genes eL14 and uS19 in a well-differentiated epithelial cell line of nasopharyngeal carcinoma. Malaysian Applied Biology, 47(1), 247-253.
Takemasa, I., Kittaka, N., Hitora, T., Watanabe, M., Matsuo, E. I., Mizushima, T., Ikeda, M., Yamamoto, H., Sekimoto, M., Nishimura, O., & Doki, Y. (2012). Potential biological insights revealed by an integrated assessment of proteomic and transcriptomic data in human colorectal cancer. International Journal of Oncology, 40(2), 551-559.
Teng, Z. P., Ooka, T., Huang, D. P., & Zeng, Y. (1996). Detection of Epstein-Barr Virus DNA in well and poorly differentiated nasopharyngeal carcinoma cell lines. Virus Genes, 13(1), 53-60.
https://doi.org/10.1007/BF00576978
Tiong, T. S., & Selva, K. S. (2005). Clinical presentation of nasopharyngeal carcinoma in Sarawak Malaysia. Medical Journal of Malaysia, 60(5), 624-628.
Tsao, S. W., Wang, X., Liu, Y., Cheung, Y. C., Feng, H., Zheng, Z., Wong, N., Yuen, P.W., Lo, A.K., Wong, Y.C., & Huang, D. P. (2002). Establishment of two immortalized nasopharyngeal epithelial cell lines using SV40 large T and HPV16E6/E7 viral oncogenes. Biochimica et Biophysica Acta (BBA)-Molecular Cell Research, 1590(1-3), 150-158.
https://doi.org/10.1016/S0167-4889(02)00208-2
Walker, S. J., Worst, T. J., & Vrana, K. E. (2003). Semiquantitative real-time PCR for analysis of mRNA levels. In Drugs of Abuse (pp. 211-227). New Jersey, United States: Humana Press.
https://doi.org/10.1385/1-59259-358-5:211
Wang, W., Nag, S., Zhang, X., Wang, M. H., Wang, H., Zhou, J., & Zhang, R. (2015). Ribosomal proteins and human diseases: pathogenesis, molecular mechanisms, and therapeutic implications. Medicinal Research Reviews, 35(2), 225-285.
https://doi.org/10.1002/med.21327
Wierzbicki, P. M., Klacz, J., Rybarczyk, A., Slebioda, T., Stanislawowski, M., Wronska, A., Kowalczyk, A., Matuszewski, M., & Kmiec, Z. (2014). Identification of a suitable qPCR reference gene in metastatic clear cell renal cell carcinoma. Tumor Biology, 35(12), 12473-12487.
https://doi.org/10.1007/s13277-014-2566-9
Wool, I. G. (1996). Extraribosomal functions of ribosomal proteins. Trends in Biochemical Sciences, 21(5), 164-165.
https://doi.org/10.1016/S0968-0004(96)20011-8
Xu, K., Zhang, Y. Y., Han, B., Bai, Y., Xiong, Y., Song, Y., & Zhou, L. M. (2017). Suppression subtractive hybridization identified differentially expressed genes in colorectal cancer: microRNA-451a as a novel colorectal cancer-related gene. Tumor Biology, 39(5), 1010428317705504.
https://doi.org/10.1177/1010428317705504
Xu, X., Xiong, X., & Sun, Y. (2016). The role of ribosomal proteins in the regulation of cell proliferation, tumorigenesis, and genomic integrity. Science China Life Sciences, 59(7), 656-672.
https://doi.org/10.1007/s11427-016-0018-0
Yang, X. Y., Ren, C. P., Wang, L., Li, H., Jiang, C. J., Zhang, H. B., Zhao, M., & Yao, K. T. (2005). Identification of differentially expressed genes in metastatic and non-metastatic nasopharyngeal carcinoma cells by suppression subtractive hybridization. Analytical Cellular Pathology, 27(4), 215-223.
https://doi.org/10.1155/2005/108490
Yeo, G. G., Beh, S. P., Tan, C. K., & Pei Jye, V. (2018). 323P Strong family history of nasopharyngeal carcinoma (NPC) in Bidayuh, a local native group in Sarawak, Malaysia. Annals of Oncology, 29 (suppl. 9), mdy438.017.
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