Prevalence and Diversity of Antibiotic Resistance Heterotrophic Bacteria Found Along the Bintulu Rivers, Sarawak

Antibiotic resistant heterotrophic aquatic bacteria

  • SUI SIEN LEONG Universiti Putra Malaysia Bintulu Sarawak Campus
  • HADI HAMLI Department of Animal Science and Fishery, Faculty of Agricultural and Forestry Science, Universiti Putra Malaysia Bintulu Sarawak Campus, Nyabau Road, 97008 Bintulu, Sarawak, Malaysia
  • ERRA FAZIRA ABDUL RAHIM Department of Animal Science and Fishery, Faculty of Agricultural and Forestry Science, Universiti Putra Malaysia Bintulu Sarawak Campus, Nyabau Road, 97008 Bintulu, Sarawak, Malaysia
  • SUHAILI MUSTAFA Department of Animal Science and Fishery, Faculty of Agricultural and Forestry Science, Universiti Putra Malaysia Bintulu Sarawak Campus, Nyabau Road, 97008 Bintulu, Sarawak, Malaysia
Keywords: Antibiotic resistance, bacteria, coliform, heterotrophic, rivers

Abstract

The study aims (1) to isolate and characterise the heterotrophic bacteria from different rivers in Bintulu, Sarawak, (2) to investigate the hygienic condition of the rivers through faecal coliforms and (3) to determine the antibiotic resistance among the heterotrophic bacteria isolates. A total of 100 heterotrophic bacteria strains were identified from rivers of Bintulu, Sarawak. The characterisation of bacteria was performed using (GTG)5 fingerprinting to investigate their genetic distribution diversity and 16S rRNA gene sequencing. Microbiological variables tested including total viable count, coliform count, Escherichia coli confirmation test. Antibiotic susceptibility test was performed against 10 antibiotics. Sample collected from Sungai Teknik showed higher mean bacterial population size (log 4.48 ± 0.00 CFU/mL). Sungai Sibiu, Waterfront and Sungai Plan revealed the highest most probable number (MPN) index (>1,600 per mL). Each dendrogram showed 3 to 7 clusters of bacteria groups confirmed as Enterobacter spp. (40%), Acinetobacter spp. (13%), Bacillus spp. (13%), Klebsiella spp. (13%), Staphylococcus spp. (7%), Chromobacterium spp. (7%) and Citrobacter spp. (7%). All the heterotrophic bacteria isolated showed high resistance against ciprofloxacin (63.70 ± 33.40%), piperacillin (58.10 ± 31.37%), aztreonam (48.40 ± 30.95%) and more susceptible to tetracycline (3.30 ± 10.44%). Our findings highlight the multiple antibiotics resistance and microbiological analysis of heterotrophic bacteria found in polluted river water. The preservation of the river water is vital as hydrologic purposes, sustain the microbial composition, ecological integrity of the river.

References

Aldred, K.J., Kerns, R.J. & Osheroff, N. (2014). Mechanism of quinolone action and resistance. Biochemistry, 53: 1565-1574. DOI: 10.1021/bi5000564

Azzam, M.I., Ezzat, S.M., Othman, B.A. & El-Dougdoug, K.A. (2017). Antibiotics resistance phenomenon and virulence ability in bacteria from water environment. Water Science, 31(2): 109-121. DOI: 10.1016/j.wsj.2017.10.001

Chen, J., McIlroy, S.E., Archana, A., Baker, D.M. & Panagiotou, G. (2019). A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments. Microbiome, 7: 104. DOI: 10.1186/s40168-019-0714-6

CLSI (Clinical and Laboratory Standards Institute). (2019). Guideline: Clinical and Laboratory Standards CLSI. In Melvin, P. and Weinstein, M.D. (eds.) Performance standards for antimicrobial susceptibility testing. USA, CSLI. pp. 32-36.

Darmawan, G., Kusumawardhani, R.N.Y., Alisjahbana, B. & Fadjari, T.H. (2018). Chromobacterium violaceum: The Deadly Sepsis. Acta Medica Indonesiana, 50(1): 80-81.

Djenadi, K. (2017). Antibiotic resistance bacteria from rivers water in Algeria. Journal of Bacteriology & Parasitology, 8: 319. DOI: 10.4172/2155-9597.1000319

DOE (Department of Environment Malaysia). (2018). Malaysia environmental quality annual report 2018. Environmental quality report. Malaysia: Department of Environment, Ministry of Science, Technology and Environment.

Eiler, A., Heinrich, F. & Bertilsson, S. (2012). Coherent dynamics and association networks among lake bacterioplankton taxa. The ISME Journal, 6: 330-342. DOI: 10.1038/ismej.2011.113

Ekhaise, F.O. & Omoigberale, M.O. (2011). Bacteriological and physicochemical qualities of Ebutte River in Ebutte community, Uhunmwonde local government area, Edo State, Nigeria. Journal of Applied Sciences & Environmental Management, 15: 663-673.

Evans, A.E.V., Hanjra, M.A., Jiang, Y., Qadir, M. & Drechsel, P. (2012). Water quality: Assessment of the current situation in Asia. International Journal of Water Resources Development, 28: 195-216. DOI: 10.1080/07900627.2012.669520

Fabian, J., Zlatanovic, S., Mutz, M. & Premke, K. (2017). Fungal-bacterial dynamics and their contribution to terrigenous carbon turnover in relation to organic matter quality. The ISME Journal, 11: 415-425. DOI: 10.1038/ismej.2016.131

Fahmi, M., Nasir, M., Samsudin, M.S., Mohamad, I., Roshide, M., Awaluddin, A. & Ramli, N. (2011). River water quality modelling using combined principle component analysis (PCA) and multiple linear regressions (MLR): A case study at Klang River, Malaysia. World Applied Sciences Journal, 14: 3-182.

Gilbert, J.A., Steele, J.A., Caporaso, J.G., Steinbrück, L., Reeder, J., Tempertonet, B., Huse, S., McHardy, A.C., Knight, R., Joint, I., Somerfield, P., Fuhrman, J.A. & Field, D. (2011). Defining seasonal marine microbial community dynamics. The ISME Journal, 6: 298-308. DOI: 10.1038/ismej.2011.107

Gillings, M.R., Gaze, W.H., Pruden, A., Smalla, K., Tiedje, J.M. & Zhu, Y-G. (2015). Using the class 1 integron integrase gene as a proxy for anthropogenic pollution. The ISME Journal, 9: 1269-1279. DOI: 10.1038/ismej.2014.226

Hamed, S.M., Elkhatib, W.F., El-Mahallawy, H.A., Helmy, M.M., Ashour, M.S. & Aboshanab, K.M.A. (2018). Multiple mechanisms contributing to ciprofloxacin resistance among Gram negative bacteria causing infections to cancer patients. Scientific Reports, 8(1): 12268. DOI: 10.1038/s41598-018-30756-4

Haron, S.H, Ismail, S. & Sidek, L.M. (2018). Heavy metal accumulation at the Bertam agricultural watershed in Cameron Highlands, Malaysia. International Journal of Engineering & Technology, 7(4): 219-222. DOI: 10.14419/ijet.v7i4.35.22735

Hedayatianfard, K., Akhlaghi, M. & Sharifiyazdi, H. (2014). Detection of tetracycline resistance genes in bacteria isolated from fish farms using polymerase chain reaction. Veterinary Research Forum, 5(4): 269-275.

Leong, S.S., Ismail, J., Denil, N., Sarbini, S., Wasli, W. & Debbie, A. (2018). Microbiological and physicochemical water quality assessments of river water in an industrial region of the Northwest Coast of Borneo. Water, 10: 1648. DOI: 10.3390/w10111648

Leong, S.S., Lihan, S. & Chia, H.C. (2020). Virulence genes detection among the antibiotic resistant Enterococcus faecalis isolated from bird industry in Borneo. Pertanika Journal of Science and Technology, 28: 673-687.

Li, K., Hu, J., Li, T., Liu, F., Tao, J., Liu, J., Zhang, Z., Luo, X., Li, L., Deng, Y. & Che, R. (2021). Microbial abundance and diversity investigations along rivers: Current knowledge and future directions. WIREs Water, 8(5): e1547. DOI: 10.1002/wat2.1547

Lingoh, A.D., Leong, S.S. & Sarbini, S.R. (2020). Detection of lactic acid bacteria (LAB) from local breed chicken gut as probiotic agent in livestock. Pakistan Journal of Nutrition, 19: 197-203. DOI: 10.3923/pjn.2020.197.203

Maron, P.A., Sarr, A., Kaisermann, A., Lévêque, J., Mathieu, O., Guigue, J., Karimi, B., Bernard, L., Dequiedt, S., Terrat, S., Chabbi, A. & Ranjard, L. (2018). High microbial diversity promotes soil ecosystem functioning. Applied and Environmental Microbiology, 84: e02738-17. DOI: 10.1128/AEM.02738-17

Mello, B.L., Alessi, A.M., McQueen-Mason, S., Bruce, N.C. & Polikarpov, I. (2016). Nutrient availability shapes the microbial community structure in sugarcane bagasse compost-derived consortia. Scientific Reports, 6: 38781. DOI: 10.1038/srep38781

Odonkor, S.T. & Mahami, T. (2020). Escherichia coli as a tool for disease risk assessment of drinking water sources. International Journal of Microbiology, 15: 2534130. DOI: 10.1155/2020/2534130

Paczosa, M.K. & Mecsas, J. (2016). Klebsiella pneumoniae: Going on the offense with a strong defense. Microbiology and Molecular Biology Reviews, 80: 629-661.

Pandey, P.K., Kass, P.H., Soupir, M.L., Biswas, S. & Singh, V.P. (2014). Contamination of water resources by pathogenic bacteria. AMB Express, 4: 51. DOI: 10.1186/s13568-014-0051-x

Purohit, M.R., Chandran, S., Shah, H., Diwan, V., Tamhankar, A.J. & Lundborg, C.S. (2017). Antibiotic resistance in an Indian rural community: a ‘one-health’ observational study on commensal coliform from humans, animals, and water. International Journal of Environmental Research and Public Health, 14: 386. DOI: 10.3390/ijerph14040386

Riedel, S., Boire, N., Carson, K.A., Vadlamudi, A., Khuvis, J., Vadlamudi, V., Atukorale, V., Riedel, V.A.A. & Parrish, N.M. (2019). A survey of antimicrobial resistance in Enterobacteriaceae isolated from the Chesapeake Bay and adjacent upper tributaries. MicrobiologyOpen 8(9): e839. DOI: 10.1002/mbo3.839

Samsudin, M.S., Juahir, H., Zain, S.M. & Adnan, N.H. (2011). Surface river water quality interpretation using environmetric techniques: Case study at Perlis River Basin, Malaysia. International Journal of Environmental Protection, 1: 1-8.

Sanders, E., Yuan, Y. & Pitchford, A. (2013). Fecal coliform and E. coli concentrations in effluent-dominated streams of the upper Santa Cruz Watershed. Water, 5: 243-261. DOI: 10.3390/w5010243

Sharma, D., Patel, R.P., Zaidi, S.T.R., Sarker, M.M.R., Lean, Q.Y. & Ming, L.C. (2017). Interplay of the quality of Ciprofloxacin and antibiotic resistance in developing countries. Frontier in Pharmacology, 8: 546. DOI: 10.3389/fphar.2017.00546

Shurin, J.B., Clasen, J.L., Greig, H.S., Kratina, P. & Thompson, P.L. (2012). Warming shifts top-down and bottom-up control of pond food web structure and function. Philosophical Transactions of the Royal Society, 367: 3008-3017. DOI: 10.1098/rstb.2012.0243

Sien, L.S., Chuan, C.H., Lihan, S. & Yee, L.T. (2013a). Isolation and identification of airborne bacteria inside swiftlet houses in Sarawak, Malaysia. Makara Journal of Science, 17: 104-108. DOI: 10.7454/mss.v17i3.2950

Sien, L.S., Lihan, S., Yee, L.T., Chuan, C.H. & Koon, L.C. (2013b). Isolation and characterization of antibiotic resistant bacteria from swiftlet feces in swiftlet farmhouses in Sarawak, Malaysia. Microbiology Indonesia, 7(4): 137-143.

Soegianto, A., Putranto, T.W.C., Lutfi, W., Almirani, F.N., Hidayat, A.R., Muhammad, A., Firdaus, R.A., Rahmadhani, Y.S., Nur Fadila, D.A. & Hidayati, D. (2020). Concentrations of metals in tissues of cockle Anadara granosa (Linnaeus, 1758) from East Java Coast, Indonesia, and potential risks to human health. International Journal of Food Science, 2020: 5345162. DOI: 10.1155/2020/5345162

Sui, X., Zhang, R., Frey, B., Yang, L., Li, M-H. & Ni, H. (2019). Land use change effects on diversity of soil bacterial, acidobacterial and fungal communities in wetlands of the Sanjiang Plain, northeastern China. Scientific Reports, 9: 18535. DOI: 10.1038/s41598-019-55063-4

Suzuki, Y., Nazareno, P.J., Nakano, R., Mondoy, M., Nakano, A., Bugayong, M.P., Bilar, J., Perez, M., Medina, E.J., Saito-Obata, M., Saito, M., Nakashima, K., Oshitani, H. & Yano, H. (2020). Environmental presence and genetic characteristics of Carbapenemase-producing Enterobacteriaceae from hospital sewage and river water in the Philippines. Applied and Environmental Microbiology, 86: e01906-19. DOI: 10.1128/AEM.01906-19

Trombetta, T., Vidussi, F., Roques, C., Scotti, M. & Mostajir, B. (2020). Marine microbial food web networks during phytoplankton bloom and non-bloom periods: warming favors smaller organism interactions and intensifies trophic cascade. Frontiers in Microbiology, 11: 502336. DOI: 10.3389/fmicb.2020.502336

Whitlock, J.E., Jones, D.T. & Harwood, V.J. (2002). Identification of the sources of fecal coliforms in an urban watershed using antibiotic resistance analysis. Water Research, 36: 4273-4282. DOI: 10.1016/s0043-1354(02)00139-2.

World Health Organization (WHO). (1998). Guidelines for Drinking. Water Quality. Second Edition. Geneva, Switzerland: World Health Organization (WHO).

Xia, X., Zhang, S., Li, S., Zhang, L., Wang, G., Zhang, L., Wanga, J. & Lia, Z. (2018). The cycle of nitrogen in river systems: sources, transformation, and flux. Environmental Science: Processes & Impacts Journal, 20: 863-891. DOI: 10.1039/C8EM00042E

Zeglin, L.H. (2015). Stream microbial diversity in response to environmental changes: review and synthesis of existing research. Frontier in Microbiology, 6: 254. DOI: 10.3389/fmicb.2015.00454

Published
2023-12-24
How to Cite
SUI SIEN LEONG, HADI HAMLI, ERRA FAZIRA ABDUL RAHIM, & SUHAILI MUSTAFA. (2023). Prevalence and Diversity of Antibiotic Resistance Heterotrophic Bacteria Found Along the Bintulu Rivers, Sarawak. Borneo Journal of Resource Science and Technology, 13(2), 32-41. https://doi.org/10.33736/bjrst.5450.2023