Application Of The Multiplex Polymerase Chain Reaction (M-PCR) For The Screening Of Vibrio Spp. From Rivers In Kuching, Sarawak
DOI:
https://doi.org/10.33736/bjrst.219.2015Keywords:
Multiplex PCR (m-PCR), Vibrio cholerae, Vibrio parahaemolyticus, Vibrio vulnificus, Vibrio spp.Abstract
The present study was conducted to investigate the occurrence of Vibrio spp. from selected rivers in Kuching,Sarawak (Malaysia) using Multiplex Polymerase Chain Reaction (m-PCR). During the 6-month study period,
19 samples were collected monthly from 7 rivers, followed by simultaneous detection of three Vibrio spp.,
Vibrio parahaemolyticus, Vibrio cholerae and Vibrio vulnificus, in a single tube PCR reaction. Three sets of
primers targeting the thermolabile (tl), outer membrane protein (ompW) and hemolysin/cytolysin genes
(vulCulsl) of V. parahaemolyticus, V. cholerae and V. vulnificus, respectively, were used. The results indicated
that V. parahaemolyticus was the predominant species, occurring approximately 60.9% throughout the
sampling period, followed by V. cholerae (23.1%) and V. vulnificus (16.0%). The months of July and
December were found to be the months where all three Vibrio spp. were found to be at higher frequencies in
the river samples. Results analyzed also indicated that the rivers with the highest prevalence of the three Vibrio
spp. were Tambak Sejingkat, followed by Sungai Jernang and Sungai Tabuan. We conclude that m-PCR is a
powerful and useful tool for the rapid and simultaneous detection of V. parahaemolyticus, V. cholerae and V.
vulnificus from the riverine environments without the need for isolation and culturing. Furthermore, this
method is highly specific, and could be applied in diagnostic laboratories for larger scale epidemiological
investigations of Vibrio spp.
References
Alam, M.J., Miyoshi, S.I., & Shinoda, S. (2003). Studies on pathogenic Vibrio parahaemolyticus during a warm weather season in the Seto Inland Sea, Japan. Environmental Microbiology, 5: 706-710.
https://doi.org/10.1046/j.1462-2920.2003.00458.x
Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Sideman, J., Smith, J., & Struhl, K. (1987). Current protocols in molecular biology. New York, USA: John Wiley & Sons. Pp 41-45.
Atlas, R.M. (1993). Handbook of microbiological media. Florida, USA:CRC Press.
Bej, A.K., Patterson, D.P., Brasher, C.W., Vickery, M.C.L., Jones, D.D., & Kaysner, C. (1999). Detection of total and hemolysin-producing Vibrio parahaemolyticus in shellfish using multiplex PCR amplication of tl, tdh and trh. Journal of Microbiological Methods, 36: 215-225.
https://doi.org/10.1016/S0167-7012(99)00037-8
Bilung, L.M., Fuh, Y.S., Linang, V., Benjamin, A., Vincent, M., Apun, K., Lihan, S., & Lin, C.S. (2014). Genomic diversity of cholera outbreak strains in East Malaysia. Malaysian Journal of Medicine and Health Sciences, 10(2): 19-26.
Blackstone, G.M., Nordstrom, J.L., Vickery, M.C.L., Bowen, M.D., Meyer, R.F., & Depaola, A. (2003). Detection of pathogenic Vibrio parahaemolyticus in oyster enrichment by real time PCR. Journal of Microbiological Methods, 53: 149-155.
https://doi.org/10.1016/S0167-7012(03)00020-4
DePaola, A., Ulaszek., J., Kaysner, C.A., Tenge, B.J., Nordstrom. J.L., Wells, J., Puhr, N., & Gendel, S.M. (2003). Molecular, serological, and virulence characteristics of Vibrio parahaemolyticus isolated from environmental, food, and clinical sources in North America and Asia. Applied Environmental Microbiology, 69: 3999-4005.
https://doi.org/10.1128/AEM.69.7.3999-4005.2003
Hlavsa, M.C., Roberts, V.A., Anderson, A.R., Hill, V.R., Kahler, A.M., OrrM, Garrison, L.E., Hicks, L.A., Newton, A., Hilborn, E.D., Wade, T.J., Beach, M.J., & Yoder, J.S. (2011). Surveillance for water borne disease outbreaks and other health events associated with recreational water-United States, 2007-2008. Morbidity and Mortality Weekly Report Surveillance Summaries, 60: 1-32.
Lee, C.Y., Panicker, G., & Bej, A.K. (2003). Detection of pathogenic bacteria in shellfish using Multiplex PCR followed by CovaLink NH microwell plate sandwich hybridization. Journal of Microbiological Methods, 53: 199-209.
https://doi.org/10.1016/S0167-7012(03)00032-0
Lee, S.E., Kim, S.Y., Kim, S.J., Kim, H.S., Shin, J,H., Choi, S,H., Chung, S.S., & Rhee, J.H. (1998). Direct identification of Vibrio vulnificus in clinical specimens by nested PCR. Journal of Clinical Microbiology, 36(10): 2887-2892.
https://doi.org/10.1128/JCM.36.10.2887-2892.1998
Lee, T. & Pan, S.F. (1993). Rapid and specific detection of the thermostable direct hemolysin gene in Vibrio parahaemolyticus by polymerase chain reaction. Journal of General Microbiology, 139: 3225-3231.
https://doi.org/10.1099/00221287-139-12-3225
Lesley, M.B., Velnetti, L., Cheah, Y.K., Son, R., Kasing, A., Samuel, L., Micky, V., & Nishibuchi, M. (2011). Antibiotic resistance and plasmid profiling of Vibrio parahaemolyticus isolated from cockles (Anadara granosa) at Tanjung Karang, Kuala Selangor. International Food Research Journal, 18: 1183-1188.
Lopez-Hernandez, K.M., Pardío-Sedas, V., Lizarraga-Partida, L., de Jesús Williams, J., Martínez-Herrera, D., Flores-Primo, A., & Uscanga-Serrano, R. (2015). Seasonal abundance of Vibrio cholerae non O1/non O139 chxA+ in oysters harvested in a coastal lagoon of Mexico's Gulf coast: A seafood safety risk concern. Food Control, 53: 46-54.
https://doi.org/10.1016/j.foodcont.2015.01.004
Malcolm, T.T.H., Cheah, Y.K., Radzi, C.W.J.W.M., Kasim, F.A., Kantilal, H.K., John, T.Y.H., Martinez-Urtaza, J., Nakaguchi, Y., Nishibuchi, M., & Son, R. (2015). Detection and quantification of pathogenic Vibrio parahaemolyticus in shellfish by using multiplex PCR and loopmediated isothermal amplification assay. Food Control, 47: 664-671.
https://doi.org/10.1016/j.foodcont.2014.08.010
Micky, V., Nur Quraitu' Aini, T., Velnetti, L., Patricia Rowena, M.B., Christy, C., & Lesley Maurice, B. (2014). Development of a SYBR green based real-time polymerase chain reaction assay for specific detection and quantification of Vibrio parahaemolyticus from food and environmental samples. International Food Research Journal, 21(3): 921-927.
Oliver, J.D. (2005). Wound infections caused by Vibrio vulnificus and other marine bacteria. Epidemiology and Infection, 133: 383-391.
https://doi.org/10.1017/S0950268805003894
Radu, S., Lihan, S., Ho, Y.K., Yuherman, Rusul, G., Yasin, R.M., Khair, J., & Elhadi, N. (1999). Molecular characterization of Vibrio cholerae 01 and non-01 from human and environmental source in Malaysia. Epidemiology and Infection, 123: 225-232.
https://doi.org/10.1017/S0950268899002769
Shaw, K.S., Sapkota, A.R., Jacobs, J.M., He, X., & Crump, B.C. (2015). Recreational swimmers' exposure to Vibrio vulnificus and Vibrio parahaemolyticus in the Chesapeake Bay, Maryland, USA. Environment International, 74: 99-105.
https://doi.org/10.1016/j.envint.2014.09.016
Son, R., Micky, V., Kasing, A., Raha, A.R., Patrick, G.B., Yuherman & Gulam, R. (2002). Molecular characterization of Vibrio cholerae 01 outbreak strains in Miri, Sarawak (Malaysia). Acta Tropicana, 83: 169-176.
https://doi.org/10.1016/S0001-706X(02)00110-9
Vincent, M., Lai, L.S., Ng, L.T., & Apun, K. (2014). Application of PCR-based DNA fingerprinting techniques for the genetic differentiation of Vibrio cholerae Non- 01/Non 0139 isolates from Kuching, Sarawak. Borneo Journal of Resource Science and Technology, 4(2): 21-34.
https://doi.org/10.33736/bjrst.233.2014
Vincent, M., Chan, C.S.W., & Apun, K. (2015). Molecular confirmation and characterization of Vibrio parahaemolyticus from retailed fish. International Food Research Journal, 22(4): 1705-1710.
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